pandora

• pandora package
  • Submodules
    • pandora.bootstrap module
      • bootstrap_and_embed_multiple()
      • bootstrap_and_embed_multiple_numpy()
    • pandora.converter module
      • get_filenames()
      • run_convertf()
    • pandora.custom_errors module
      • PandoraConfigException
      • PandoraException
    • pandora.custom_types module
      • AnalysisMode
      • EmbeddingAlgorithm
      • FileFormat
    • pandora.dataset module
      • EigenDataset
      • NumpyDataset
      • numpy_dataset_from_eigenfiles()
    • pandora.distance_metrics module
      • euclidean_population_distance()
      • euclidean_sample_distance()
      • fst_population_distance()
      • hamming_sample_distance()
      • manhattan_population_distance()
      • manhattan_sample_distance()
      • missing_corrected_hamming_sample_distance()
      • population_distance()
    • pandora.embedding module
      • Embedding
      • MDS
      • PCA
      • check_smartpca_results()
      • from_sklearn_mds()
      • from_smartpca()
    • pandora.embedding_comparison module
      • BatchEmbeddingComparison
      • EmbeddingComparison
      • filter_samples()
      • match_and_transform()
    • pandora.imputation module
      • impute_data()
    • pandora.logger module
      • fmt_message()
    • pandora.main module
      • argument_parser()
      • get_header()
      • main()
    • pandora.pandora module
      • Pandora
      • PandoraConfig
      • convert_to_eigenstrat_format()
      • pandora_config_from_configfile()
    • pandora.plotting module
      • get_distinct_colors()
      • get_rdylgr_color_scale()
      • improve_plotly_text_position()
      • plot_clusters()
      • plot_embedding_comparison()
      • plot_embedding_comparison_rogue_samples()
      • plot_populations()
      • plot_projections()
      • plot_support_values()
    • pandora.sliding_window module
      • sliding_window_embedding()
      • sliding_window_embedding_numpy()
  • Module contents